rs27483452 SNP Detail

Summary

• ID
  rs27483452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114944126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC ACACACACAC ACACACTGCA TCCTGAGGGA
  GCCATGTGAT GTGTCTTACT TTGAGACATT GCCACTCACC CAATTGCCTA ACTCAGAAAC
  Y
  TAACCTGAGA GTTTCCAGTT TCCAAGTGGG CAGCAGTTAG TCACTTGTCC AGAAACCACG
  CCCAGGCTTT CCTACCTCCC AAGCACTGAG CAAAGCCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37697672	NES09217431	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T		T	C	T	T	T	T	T	T
ss45622615	mCV23198188	ABI	CRAMUS_MOUSE	f	SNP		T	C				T		C
ss147272925	ENSMUSSNP1650958	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27483452					SNP	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697672	NES09217431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114944126 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	1779 bp upstream
Rr597711	regulatory region 597711	899 bp distal
Rr597712	regulatory region 597712	1146 bp distal
Rr597713	regulatory region 597713	within coordinates
Rr597714	regulatory region 597714	1484 bp proximal
Tssr38446	transcription start site region 38446	1805 bp upstream
Tssr38447	transcription start site region 38447	1850 bp upstream
Tssr38448	transcription start site region 38448	1934 bp upstream
Tssr38449	transcription start site region 38449	1976 bp upstream
Tssr38450	transcription start site region 38450	1985 bp upstream