rs27483449 SNP Detail

Summary

• ID
  rs27483449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114944841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTAGCTT CCTTATTTCC TAAATCTGGT CAAGCCAGGT
  TGATATTGGC TTCTTCAGAA CATAAACTTA GTCTCGTGTT GGACCAAGAT CACAGGCTCT
  R
  TGTTTTGTAG TCGGGGACAG ATGGGCATGA TGACTGTGCC CTGGGGCTTT CTGAGTACCT
  GTCTGAAGCC AAGACAGCAT GAAATCTCCT ACCTGAGTGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697669	NES09217434	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483449					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697669	NES09217434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114944841 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	1064 bp upstream
Rr597711	regulatory region 597711	1614 bp distal
Rr597712	regulatory region 597712	1861 bp distal
Rr597713	regulatory region 597713	325 bp distal
Rr597714	regulatory region 597714	769 bp proximal
Tssr38446	transcription start site region 38446	1090 bp upstream
Tssr38447	transcription start site region 38447	1135 bp upstream
Tssr38448	transcription start site region 38448	1219 bp upstream
Tssr38449	transcription start site region 38449	1261 bp upstream
Tssr38450	transcription start site region 38450	1270 bp upstream
Tssr38451	transcription start site region 38451	1346 bp upstream
Tssr38452	transcription start site region 38452	1511 bp upstream