rs27483448 SNP Detail

Summary

• ID
  rs27483448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114944903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGCCCT GGCTGGTGTT
  TAATGTCGCA GCCACCCATT CTTAGCTTCC TTATTTCCTA AATCTGGTCA AGCCAGGTTG
  ATATTGGCTT CTTCAGAACA TAAACTTAGT CTCGTGTTGG ACCAAGATCA CAGGCTCTGT
  GTTTTGTAGT CGGGGACAGA TGGGCATGAT GACTGTGCCC TGGGGCTTTC TGAGTACCTG
  Y
  CTGAAGCCAA GACAGCATGA AATCTCCTAC CTGAGTGTGC ACTGGAAAGG TCTGAGCATA
  ACGTCCTTTT AGGAAACCAT GCAAGCAACA GGGACTGCCA AAAAATCCTC TCCCCTCCTT
  TCCTTAGGAA GGGGGTCTAG CCTGCTCTTG CATCTCAACT CCTATATTCT AGGGTAGCTG
  GGACAAGGAG GTCCACCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697668	NES09217435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483448					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697668	NES09217435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114944903 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	1002 bp upstream
Rr597711	regulatory region 597711	1676 bp distal
Rr597712	regulatory region 597712	1923 bp distal
Rr597713	regulatory region 597713	387 bp distal
Rr597714	regulatory region 597714	707 bp proximal
Tssr38446	transcription start site region 38446	1028 bp upstream
Tssr38447	transcription start site region 38447	1073 bp upstream
Tssr38448	transcription start site region 38448	1157 bp upstream
Tssr38449	transcription start site region 38449	1199 bp upstream
Tssr38450	transcription start site region 38450	1208 bp upstream
Tssr38451	transcription start site region 38451	1284 bp upstream
Tssr38452	transcription start site region 38452	1449 bp upstream