rs27483447 SNP Detail

Summary

• ID
  rs27483447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114945208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCTCCC CTCCTTTCCT
  TAGGAAGGGG GTCTAGCCTG CTCTTGCATC TCAACTCCTA TATTCTAGGG TAGCTGGGAC
  AAGGAGGTCC ACCACGGACT TACACCCCAG ACTTCAGTAG GTACTTGGGT CATCCCTAGT
  GTTTGGAAGG TCTGGCAGAT GCTGTGTGTC CTGCTGGGTG GGAGATGTGC TTCTGCAATG
  Y
  CTGGCCCTGT GATGTAGATT TCTGAGGGAC AGATGAACTT CTCATGGCTA TTCCTGTCTG
  TAGACTGCAC CCGGGCATTT GGAAGTCTCA GGGAATGAGC AGAACAAAGG AAGATTGCTA
  AGACACGTGC ATGAAGTAGG CATGCACACA TAGGGGAAGC AGGCTCAGGG CTCCCACCTG
  CTTTGGACAT TCCAGGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697667	NES09217436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483447					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697667	NES09217436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114945208 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	697 bp upstream
Rr597711	regulatory region 597711	1981 bp distal
Rr597713	regulatory region 597713	692 bp distal
Rr597714	regulatory region 597714	402 bp proximal
Tssr38446	transcription start site region 38446	723 bp upstream
Tssr38447	transcription start site region 38447	768 bp upstream
Tssr38448	transcription start site region 38448	852 bp upstream
Tssr38449	transcription start site region 38449	894 bp upstream
Tssr38450	transcription start site region 38450	903 bp upstream
Tssr38451	transcription start site region 38451	979 bp upstream
Tssr38452	transcription start site region 38452	1144 bp upstream