rs27483446 SNP Detail

Summary

• ID
  rs27483446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114945335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA AAGGAAGATT GCTAAGACAC
  R
  TGCATGAAGT AGGCATGCAC ACATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37697666	NES09217437	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	A	G	A	A		A	A	G	A		A
ss321275323	CHEV_4_114760743	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27483446					SNP	G	G	G	A	G	A	A	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697666	NES09217437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114945335 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	570 bp upstream
Rr597713	regulatory region 597713	819 bp distal
Rr597714	regulatory region 597714	275 bp proximal
Tssr38446	transcription start site region 38446	596 bp upstream
Tssr38447	transcription start site region 38447	641 bp upstream
Tssr38448	transcription start site region 38448	725 bp upstream
Tssr38449	transcription start site region 38449	767 bp upstream
Tssr38450	transcription start site region 38450	776 bp upstream
Tssr38451	transcription start site region 38451	852 bp upstream
Tssr38452	transcription start site region 38452	1017 bp upstream