rs27483445 SNP Detail

Summary

• ID
  rs27483445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114945383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGAGA TGTGCTTCTG
  CAATGCCTGG CCCTGTGATG TAGATTTCTG AGGGACAGAT GAACTTCTCA TGGCTATTCC
  TGTCTGTAGA CTGCACCCGG GCATTTGGAA GTCTCAGGGA ATGAGCAGAA CAAAGGAAGA
  TTGCTAAGAC ACGTGCATGA AGTAGGCATG CACACATAGG GGAAGCAGGC TCAGGGCTCC
  Y
  ACCTGCTTTG GACATTCCAG GGAACCACTG GTTGGAATGA AAGGAATGAG GCAGAACTAG
  CAAATATCCA CCATGCTTCC CTCGTTAGTT TTAAGCAGGG TGCAGATCTC CATTTGATAA
  AATAAATAGG TCACTGAAGG TGGGAGATGT CTGCTGTGAT GAAGGGAGGT GGATCTGAAG
  GCAGATGTTG AGACTTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697665	NES09217438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483445					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697665	NES09217438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114945383 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	522 bp upstream
Rr597713	regulatory region 597713	867 bp distal
Rr597714	regulatory region 597714	227 bp proximal
Tssr38446	transcription start site region 38446	548 bp upstream
Tssr38447	transcription start site region 38447	593 bp upstream
Tssr38448	transcription start site region 38448	677 bp upstream
Tssr38449	transcription start site region 38449	719 bp upstream
Tssr38450	transcription start site region 38450	728 bp upstream
Tssr38451	transcription start site region 38451	804 bp upstream
Tssr38452	transcription start site region 38452	969 bp upstream
Tssr38453	transcription start site region 38453	1974 bp upstream
Tssr38454	transcription start site region 38454	1982 bp upstream