rs27483444 SNP Detail

Summary

• ID
  rs27483444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114945517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT TTGATAAAAT AAATAGGTCA
  Y
  TGAAGGTGGG AGATGTCTGC TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37697664	NES09217439	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	T	T		T	T	C	T		T
ss321275324	CHEV_4_114760925	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27483444					SNP	C	C	C	T	C	T	C	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697664	NES09217439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114945517 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	388 bp upstream
Rr597713	regulatory region 597713	1001 bp distal
Rr597714	regulatory region 597714	93 bp proximal
Tssr38446	transcription start site region 38446	414 bp upstream
Tssr38447	transcription start site region 38447	459 bp upstream
Tssr38448	transcription start site region 38448	543 bp upstream
Tssr38449	transcription start site region 38449	585 bp upstream
Tssr38450	transcription start site region 38450	594 bp upstream
Tssr38451	transcription start site region 38451	670 bp upstream
Tssr38452	transcription start site region 38452	835 bp upstream
Tssr38453	transcription start site region 38453	1840 bp upstream
Tssr38454	transcription start site region 38454	1848 bp upstream
Tssr38455	transcription start site region 38455	1868 bp upstream