rs27483442 SNP Detail

Summary

• ID
  rs27483442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114946223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA CTTCTGCCTT ACCCAATCCA
  R
  CCTCTCCTTT AGAGTCAGAC TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37697662	NES09217441	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	G	G		G	G	A	G		G
ss321275325	CHEV_4_114761631	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27483442					SNP	A	A	A	G	A	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697662	NES09217441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114946223 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pdzk1ip1	PDZK1 interacting protein 1			Coding-NonSynonymous
				Intron
				mRNA-UTR
Rr597713	regulatory region 597713			1707 bp distal
Rr597714	regulatory region 597714			293 bp distal
Tssr1267	transcription start site region 1267			1970 bp upstream
Tssr38446	transcription start site region 38446			257 bp downstream
Tssr38447	transcription start site region 38447			236 bp downstream
Tssr38448	transcription start site region 38448			154 bp downstream
Tssr38449	transcription start site region 38449			117 bp downstream
Tssr38450	transcription start site region 38450			101 bp downstream
Tssr38451	transcription start site region 38451			within coordinates
Tssr38452	transcription start site region 38452			129 bp upstream
Tssr38453	transcription start site region 38453			1134 bp upstream
Tssr38454	transcription start site region 38454			1142 bp upstream
Tssr38455	transcription start site region 38455			1162 bp upstream