rs27483440 SNP Detail

Summary

• ID
  rs27483440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114946818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGGAAT TGAGATCCAA
  ACCTCACAGC AGGAATTGTC CCAGAGACAA CTCAGTCCTG GGGCTAGAAA CAGAGACTGG
  GACCAGTCCC AGTGCACCTT CAAATGCTTG CTCTGGATGG GGGCTAGGGG GTGGTGACAT
  TAAAGGCATA AGCCCCTGGA CTGGATGACC TAAGTCCTCT TTGTCACTTT CTCCATAGTC
  R
  TCCCACCGTG GGGGTACTCT TCACCAAGCT CTTTCTGTCT TGCTGTGTGG CCATGAGGGA
  ATTCCTGTCC CACTCTGAGT CTTAGTTTTT TTTTTTTTTT TAATTCATTC TCAGTAAATC
  TTACCCTGCC CACCTCTCAG AGCTGCTGTT AGGTTGGAGG TATGAAAGGG TTTTGTACCA
  GAGAGATTGA GTAACTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697660	NES09217443	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483440					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697660	NES09217443	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114946818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pdzk1ip1	PDZK1 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr597714	regulatory region 597714			888 bp distal
Tssr1267	transcription start site region 1267			1375 bp upstream
Tssr38446	transcription start site region 38446			852 bp downstream
Tssr38447	transcription start site region 38447			831 bp downstream
Tssr38448	transcription start site region 38448			749 bp downstream
Tssr38449	transcription start site region 38449			712 bp downstream
Tssr38450	transcription start site region 38450			696 bp downstream
Tssr38451	transcription start site region 38451			472 bp downstream
Tssr38452	transcription start site region 38452			462 bp downstream
Tssr38453	transcription start site region 38453			539 bp upstream
Tssr38454	transcription start site region 38454			547 bp upstream
Tssr38455	transcription start site region 38455			567 bp upstream