rs27483439 SNP Detail

Summary

• ID
  rs27483439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114947043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTCTTT CTGTCTTGCT
  GTGTGGCCAT GAGGGAATTC CTGTCCCACT CTGAGTCTTA GTTTTTTTTT TTTTTTTAAT
  TCATTCTCAG TAAATCTTAC CCTGCCCACC TCTCAGAGCT GCTGTTAGGT TGGAGGTATG
  AAAGGGTTTT GTACCAGAGA GATTGAGTAA CTTATATAGA TTCACGAAGA AACCGGTCCA
  R
  GACCATTTTT CTTCTGCTTT TGACTCTATC CCTTGCTCTA TAAGCTCTCC CCATAGCCAC
  AAGAGGAGGA TGTCTGTGAG GAGTTAGCTG TAAGAGCCAC AGAAGAAGGA AAATGGGAGG
  GGACCTCCCA GGGTTGTTCC CAATGCCTGA GCATCATAGA CCAGAAAAAG TAATGGACCT
  GAGCCCAGGT TTCTTGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697659	NES09217444	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483439					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697659	NES09217444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114947043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pdzk1ip1	PDZK1 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr597714	regulatory region 597714			1113 bp distal
Tssr1267	transcription start site region 1267			1150 bp upstream
Tssr38446	transcription start site region 38446			1077 bp downstream
Tssr38447	transcription start site region 38447			1056 bp downstream
Tssr38448	transcription start site region 38448			974 bp downstream
Tssr38449	transcription start site region 38449			937 bp downstream
Tssr38450	transcription start site region 38450			921 bp downstream
Tssr38451	transcription start site region 38451			697 bp downstream
Tssr38452	transcription start site region 38452			687 bp downstream
Tssr38453	transcription start site region 38453			314 bp upstream
Tssr38454	transcription start site region 38454			322 bp upstream
Tssr38455	transcription start site region 38455			342 bp upstream