rs27483438 SNP Detail

Summary

• ID
  rs27483438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114947212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGTCTGTG AGGAGTTAGC TGTAAGAGCC ACAGAAGAAG
  GAAAATGGGA GGGGACCTCC CAGGGTTGTT CCCAATGCCT GAGCATCATA GACCAGAAAA
  R
  GTAATGGACC TGAGCCCAGG TTTCTTGGAC AGAGTGGGAA GGATATCTCC ACAACATGGG
  CCCTTGCAGA GCAATCATGT GCATCTTCTA CTAGGGGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37697658	NES09217445	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		A	G	A	A	A	A	A	A	A
ss45679303	mCV23198181	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss147272928	ENSMUSSNP6613560	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27483438					SNP	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37697658	NES09217445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114947212 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pdzk1ip1	PDZK1 interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr597714	regulatory region 597714			1282 bp distal
Tssr1267	transcription start site region 1267			981 bp upstream
Tssr38446	transcription start site region 38446			1246 bp downstream
Tssr38447	transcription start site region 38447			1225 bp downstream
Tssr38448	transcription start site region 38448			1143 bp downstream
Tssr38449	transcription start site region 38449			1106 bp downstream
Tssr38450	transcription start site region 38450			1090 bp downstream
Tssr38451	transcription start site region 38451			866 bp downstream
Tssr38452	transcription start site region 38452			856 bp downstream
Tssr38453	transcription start site region 38453			145 bp upstream
Tssr38454	transcription start site region 38454			153 bp upstream
Tssr38455	transcription start site region 38455			173 bp upstream