rs27482301 SNP Detail

Summary

• ID
  rs27482301
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117538325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTAGTAA AAGGCATCCA
  TTTCCAAGGG CGAACCTTCT TGGACCCCAG TTTCGCCTTC ACTGTCCGAT ACCCCTGACC
  AGTGTCACTG GGCAGCAGTG GGGGTGCATC CCTGGCAGTG GAGGTGAAAG GTTAGAAGCA
  GGTGTGTGAA GAACCTCTAA AGCCATGAAG CTCAGTCTAC CCCAGAATAA GGAAGTCATG
  W
  CCTGGAGCAA GACACTGAGC TGTCCTGCAG GAGGAGCCCT AGTTGGGGAT ACTGGCGTGG
  GGGAAAGTAG AAGAGAAAAT AGGGACATAG GGCTATGCCT GGTGAGCTAG GGGAAACACG
  GAGGACTTGG GATTCCAATA CTTGCTTTTT GTCAGAGTAA AGCAAAGCAT AGACCTCCCG
  ATGCATGCCC TCAGGCCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691420	NES09207992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482301					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691420	NES09207992	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117538325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14667	CpG island 14667			352 bp proximal
Dmap1	DNA methyltransferase 1-associated protein 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr367679	regulatory region 367679			1049 bp upstream
Rr598199	regulatory region 598199			1135 bp proximal
Tssr42990	transcription start site region 42990			1088 bp downstream
Tssr42991	transcription start site region 42991			1105 bp downstream