rs27482297 SNP Detail

Summary

• ID
  rs27482297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117538831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTATCAGGG AAGAAAGTCC TTCCCTCACC TCAAGACTGT
  CACAATGTCT TGCTCTCTCT TCCCAACAAC TTACAAGTGT CAGGTTCCCT CGGTCCTCTC
  R
  TCCGTTGGCG GTTTCCCCGC TCTCTTGGTC CCCACCTCCC AGTGTCCCCT CTTCGTTACA
  TTAAGGGTGG CATGCTCTTG TTCCATTGTA GCTCTCCTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691416	NES09207996	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482297					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691416	NES09207996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117538831 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dmap1	DNA methyltransferase 1-associated protein 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr367679	regulatory region 367679			543 bp upstream
Rr598199	regulatory region 598199			629 bp proximal
Tssr42990	transcription start site region 42990			582 bp downstream
Tssr42991	transcription start site region 42991			599 bp downstream