rs27482294 SNP Detail

Summary

• ID
  rs27482294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117539588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGCCCA CTCCTCAAAT
  TACCTCTCTC TGAAGACCCA CGGATAGGAA CTTCCGGCTG TGCGTCGTAG AAACGCAACC
  CTTAGAAACA CTTCCGGTCG GTGCTTAGAC AAACAGGAGC CGGCTAGCAA CCCAGTGTGC
  AAGCTACCGG GCAGGCTGAG TCGCTCGCCT GGAATTCCTG CTGTGCTCCC AGGAATCCGC
  R
  CGAGGCGATG CGGGGCTTGC TTTTGACATT TACCTTCTAT TTCTCTACAT TGTGTCCCGG
  GCAATGAAAA GAAAACCTGA AGAGAACTCT GTGACATTGA AAAGTCACTT ATTTTCTCAA
  AACCTATTTC AAAACACTTA ATTTGTTTAC AAAATGAAAA TTGTAACAGC TCCTGCTTAA
  GTGAAATACC AATAACCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691413	NES09207999	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482294					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691413	NES09207999	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117539588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14667	CpG island 14667	within coordinates
Dmap1	DNA methyltransferase 1-associated protein 1	138 bp upstream
Rr367679	regulatory region 367679	within coordinates
Rr598199	regulatory region 598199	within coordinates
Tssr42990	transcription start site region 42990	166 bp upstream
Tssr42991	transcription start site region 42991	112 bp upstream