rs27482293 SNP Detail

Summary

• ID
  rs27482293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117539590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GTGCTCCCAG GAATCCGCGC
  R
  AGGCGATGCG GGGCTTGCTT TTGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37691412	NES09208000	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A	G	G	A	G		G	A	G	G
ss321279886	CHEV_4_117354998	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27482293					SNP	G	G	G	A	A	A	G	G	A	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691412	NES09208000	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117539590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14667	CpG island 14667	within coordinates
Dmap1	DNA methyltransferase 1-associated protein 1	140 bp upstream
Rr367679	regulatory region 367679	within coordinates
Rr598199	regulatory region 598199	within coordinates
Tssr42990	transcription start site region 42990	168 bp upstream
Tssr42991	transcription start site region 42991	114 bp upstream