rs27482291 SNP Detail

Summary

• ID
  rs27482291
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117540714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATCAGC TCCTGCCTCC
  AGGATCGTAC CCTGTTTGAA TTCCTGTCCT GAATTCCTTT GGTGATAAAT AGCAATGTGG
  CAGTATAAGC CAAATAAACC CTTTCCTCCC CAACTTGCTT TTGGTCATGG TGTTTCATGG
  AAGCAATAGT AATACACACA CATACCACGC CACATGTCTA TGTACTTAGG TTGTCAATAT
  K
  TAGGAATGAC TAGAAGCCCT TATCTTGTTT TCACAAGGGA GTATGTCATT TCAACTGCTT
  TAACAGCTAT CAGTCTATTT ACTCTTGACT CCCATATTAG TAGTCGCTAT CTCCTGCCCC
  CCTCCAAGTA CGGCCTAAAA GAAAAAATGA CAAGGGGCTG GAGAAATGGT TCAGTGGTTA
  AGGGCACTAC TGCTCTTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691410	NES09207952	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482291					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691410	NES09207952	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117540714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14667	CpG island 14667	1093 bp distal
Dmap1	DNA methyltransferase 1-associated protein 1	1264 bp upstream
Rr367679	regulatory region 367679	1111 bp downstream
Rr598199	regulatory region 598199	754 bp distal
Tssr42990	transcription start site region 42990	1292 bp upstream
Tssr42991	transcription start site region 42991	1238 bp upstream