rs27482145 SNP Detail

Summary

• ID
  rs27482145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117229621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCCCAG AAGAATGCAG
  AATATGCTTT CCAGAACATT CATGACTGTC CTTAAAAGAC AGATATTGAC TCCTGCCCCG
  GTGAGACCCT GGAAAACTGG ACAGGCTCTC CCATGCCACA GTCATGGTCA GAACCACAGC
  CAGAGAGGCT TCTTGCACCC ACTGCTAGAA TCAAGAGCCT AGAAGGAGGC AATGTTTCTG
  Y
  AGGCCAGCTT CCCTAGGGTT CTCAGCCTTT GGCAATTGTG GAGATGTGAC TTCCATGAAT
  ATAAACAGAC CATACTTTCC TCTCACCAGA GACAGTTCCG TGGGTTTGTC TAGTCTCAGT
  CTTAAGGCAC AGGACACCAA GGAGAAGGAG ACGGCTCAGA GCAGCGCTAG GCCTTTGCAA
  AGGATTCATC ATAGGGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692571	NES09215936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482145					SNP	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692571	NES09215936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117229621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			844 bp upstream
Rr598132	regulatory region 598132			1526 bp distal
Rr598133	regulatory region 598133			229 bp distal
Rr598134	regulatory region 598134			354 bp proximal