rs27482142 SNP Detail

Summary

• ID
  rs27482142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117230314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCCAGC CTCCCTAATG
  GTCTTCAGGA AGAGCCTTGG CCAGAGGCAA TAGTCAGTCT TCTGGTCTTC CAGCTTTGTT
  CCTGGGATCT CCATGGAGAA GAGCGAGCTG AGCCAAGGCT GCAGCTCTCT GATCTTAGCT
  ACAGAGACAA GCTGGAGGCT TGGCTGTCCA ACGGGGACTA GTTCAAGCAG TGGGGCAAGA
  Y
  GGCAAGAGCC ACACAGCCCC GTGTCTCTAC ATCATTCATC TGCTTATAAA TGCCACCCAC
  CTGGAGGGAG GAGGCCCTTT AGGATGGGGA CCAGTGGCCA CCTTTTGGTT TTCCATTTGG
  CAGGACAAGG ATGGGAAAAG CCTAGGGTGA CAGATTCTCA GGGGGTATGC TCCCTCCAAC
  CCTGCACCAG GTCCTGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692568	NES09215911	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482142					SNP	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692568	NES09215911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117230314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			151 bp upstream
Rr598133	regulatory region 598133			922 bp distal
Rr598134	regulatory region 598134			within coordinates