rs27482141 SNP Detail

Summary

• ID
  rs27482141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117231678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGGACT CTAGTAAGTC
  AGAAACAAGG TGGGGATGGG GAGCCCGGGG AGCCCCCGCC TCAGCAGCTC TTCCTCTGTT
  GAGATGTCAC AGTGAGTTAT GGGTCACGTG GAGGTGTAGC CTCCGTGGCC ACTCATCCAG
  GGCCCTGCCT CTCTTTTGTT AATAAGCCTA TCTTTCTTGG AACCTTTGCT TTTTTCCGAG
  R
  CCAATTTTGG AGATTAAGGT TACTTGGGAT TGTGGACCCA GGTCCTCACT CCCAAGCCAT
  CTTTTCAGTA AGTCCTCTAC GTCCTGGTGA CAGCTTCACT CCCAACACCA TCTAGGTGTC
  AGGCAGACAT CTTAAGAAGC AGAAATTCTA GCAAGGCTTG AAGCTGAATG TGTAGTCCTC
  TACTGATGCC CTCTGGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37692567	NES09215912	PERLEGEN	MM_PANEL2	f	SNP	A	G	A		G	G	G		A
ss321279265	CHEV_4_117047086	CHEVERUD	SCREENING_POP	f	SNP				A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27482141					SNP	A	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692567	NES09215912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117231678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			within coordinates
Rr598134	regulatory region 598134			within coordinates
Tssr42980	transcription start site region 42980			972 bp downstream
Tssr42981	transcription start site region 42981			990 bp downstream
Tssr42982	transcription start site region 42982			1014 bp downstream