rs27482139 SNP Detail

Summary

• ID
  rs27482139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117231879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTTTGG AGATTAAGGT
  TACTTGGGAT TGTGGACCCA GGTCCTCACT CCCAAGCCAT CTTTTCAGTA AGTCCTCTAC
  GTCCTGGTGA CAGCTTCACT CCCAACACCA TCTAGGTGTC AGGCAGACAT CTTAAGAAGC
  AGAAATTCTA GCAAGGCTTG AAGCTGAATG TGTAGTCCTC TACTGATGCC CTCTGGGAGG
  Y
  CACAGCCTTG GTCTAGTGGT ACCCAGTGCC CTGGGAGCTT CTGGCGCATC TTAGTTAACT
  GTCGGGCTGA TGGGAAACAT CTGGTAAACT GAAAACTGAT ATGATAAAGC TGCCTTAAGG
  ATGATCTGGA CAGCCTATGT TGCCCCATCT GTTATTGGTT GCTGCCAACA TGCATATGAG
  AAACGGCTAA GAAGCCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692565	NES09215914	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482139					SNP	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692565	NES09215914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117231879 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			within coordinates
Rr598134	regulatory region 598134			within coordinates
Tssr42980	transcription start site region 42980			771 bp downstream
Tssr42981	transcription start site region 42981			789 bp downstream
Tssr42982	transcription start site region 42982			813 bp downstream