rs27482138 SNP Detail

Summary

• ID
  rs27482138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117232068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGGAG GTCACAGCCT
  TGGTCTAGTG GTACCCAGTG CCCTGGGAGC TTCTGGCGCA TCTTAGTTAA CTGTCGGGCT
  GATGGGAAAC ATCTGGTAAA CTGAAAACTG ATATGATAAA GCTGCCTTAA GGATGATCTG
  GACAGCCTAT GTTGCCCCAT CTGTTATTGG TTGCTGCCAA CATGCATATG AGAAACGGCT
  R
  AGAAGCCTGT GAGATGGCTC AGTGGGTTGG AGGCATTTTC TAACAATTCT CATGACCTGA
  GTTTGATCTC TGGACCCTAC GTAGTGAAAG AGAGAACAAA CTCACACAAG TTGCCCTCTG
  ATCTCGATAG AGGGAGGGGA GGGAAAGGAA GAAGAGAAAG AGGAAGAAAA AGAGGAAGAC
  CAGCTAAGAA GGAGGAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692564	NES09215915	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27482138					SNP	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692564	NES09215915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117232068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			within coordinates
Rr598134	regulatory region 598134			within coordinates
Tssr42980	transcription start site region 42980			582 bp downstream
Tssr42981	transcription start site region 42981			600 bp downstream
Tssr42982	transcription start site region 42982			624 bp downstream