rs27482136 SNP Detail

Summary

• ID
  rs27482136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117232685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCAGGTG ACAAGAGGGA
  ACATACCTGT TTCACCTGGA GATGTCAGGA TCCCTGTTGG ATGTGTGAAG AGCTCAGGGC
  CCTCCAAGTT CCCCCTTCTG GAAGGCAATC TCCAAGTCCC TGCTGGGAGG CCCTGGAAGC
  AGTACTTCCC AAGGAGTGTA GTAATGACTC AGCTAGAAGC TGCAGCTAGG AAGCAGGTTT
  Y
  TAAAGAATCT TCCAGCAAGT TCTCAGAAGG CAGGGTTCTA GAGACATCAT AATCCACCAA
  GGAAATGATG CATGACATGG GATGCTGTGG AGTGCTCCCG AGTTTAAACC TAGCTGGTCA
  CTAGCTGTGT GGCTTTCATT AAGTTCCTTG ACTTTTCTGA GGTTTGGTTT CCTCTTCCAA
  AAAAGGGATC TTAAGGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37692562	NES09215887	PERLEGEN	MM_PANEL2	f	SNP	C	C	T		T	C	T		T
ss321279268	CHEV_4_117048093	CHEVERUD	SCREENING_POP	f	SNP				T				C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27482136					SNP	C	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692562	NES09215887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117232685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			1 bp downstream
Rr598134	regulatory region 598134			594 bp distal
Tssr42980	transcription start site region 42980			21 bp upstream
Tssr42981	transcription start site region 42981			3 bp upstream
Tssr42982	transcription start site region 42982			7 bp downstream