rs27481983 SNP Detail

Summary

• ID
  rs27481983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117272954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCCCAC CCCCTGCCCT
  GCACGCACAA GACTCTCCCT TTGTATCTTT GTATCACTTC AGGCTGGTGC AAAAGGAGCC
  CTGGCTCTGA GCTGCCCATT GTCTCTGCCA CCCCACCCCC TGCCTTCTGC AGCCTGGAGC
  TCTGTGCTGG GCCCTGGTCT CCTTGGCCAA ACCGAGAAGT TGGGGCTGCC TGGCCCACTC
  Y
  ATGGTGGCAG AGAAGAGCCA AGTGTCACTG TACCTGAAGA GTGCCTGGCG CTGTGGCTGC
  CTTCCCTCCC TTTATGGACT CAAGGGTAGA CCCAGCAGAG CCCCAAGCTG GTTTCCTCAT
  CTTCCTGGAC ACCAGATGGA GCTCCTCCCT CCCTCCTCTC TCCTCAGAGA CCAGTTCCCT
  CCCTCTGCAG CAAGAGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692402	NES09214503	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27481983					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692402	NES09214503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117272954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377058	regulatory region 377058			within coordinates
Rr598144	regulatory region 598144			within coordinates
Rr598145	regulatory region 598145			125 bp proximal
Rr598146	regulatory region 598146			1156 bp proximal