rs27481980 SNP Detail

Summary

• ID
  rs27481980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117273508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTAATG AATTAATTCA
  ACAAGTATTT ATTGAGCATC TATCTTGTGC TCATTGGGGA AAGAGTAGAA AAGAAAGCCT
  TTATCACAGA ATTCACATTG TTGTAGGTAA GAGACAAATC AATACGTAAT ACCTCAGGCA
  AAAGTCTGTA GAGGAGTGTA GGGAAAGACA GAGTGCAAGA TGGTTCCGTG GATAAAGGTG
  M
  TTGCTGACTA GCCGGTGGTC TTTATGGACT AGAAGGGGAG AACCGACCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TACCTCTCTC TCTCTCTCTC TCTCTCTCTC ACACACACAC
  ACACACACCA CACAAGTGTA TGAAAAAGGG CTAAGCTGAT ATTCCAGCAT AAAGTGAGGA
  GGGGCTCACA AGCCTCCATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37692399	NES09214461	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	C	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27481980					SNP	A	A	A	C	A	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692399	NES09214461	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117273508 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377058	regulatory region 377058			37 bp downstream
Rr598144	regulatory region 598144			146 bp distal
Rr598145	regulatory region 598145			408 bp distal
Rr598146	regulatory region 598146			602 bp proximal