rs27481977 SNP Detail

Summary

• ID
  rs27481977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117275046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCTTC CTCCCTGAGT
  TCCTGTCCTG ACTTCCCTCA GTGATGCCGT GTAACCCGGA AGTGTAAGAT GAAATAAACC
  CTTCCAAGTT GTTTTTGGTT ATTTTGGTGT TTATTGCAGC AACAGAAAAG TAAGCCTAAA
  CCAAGACCAT TGTAGCCATT TGTTGTTACA GCCAGAGAGG AAGAGTTGAT TATTTGGGCT
  W
  CTAAGCTTTA GAAGACTTGG GTTGGGTTTG GGACTTATAT ACAAATATGA GATGCCAGTT
  AGAAATGTAC CTTGTGCCAC TAGGTAGGTG AGTCTGAAGT TTAAAGAGAA GCCCAGGTTG
  GAATTGAAAT CTGAGTCTAT AACTATAACA AAGAGCGGGT ATCAAAGCCG TGAGGCTGGA
  GAGAGGCAGC CTGAGGACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692396	NES09214397	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27481977					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692396	NES09214397	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117275046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377058	regulatory region 377058			1575 bp downstream
Rr598144	regulatory region 598144			1684 bp distal
Rr598145	regulatory region 598145			1946 bp distal
Rr598146	regulatory region 598146			602 bp distal