rs27480997 SNP Detail

Summary

• ID
  rs27480997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114567120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATAATT TATATTCTGT
  TTCTCATATA CTACTAAAGT ATAAAGCTTG CGTAATCTGA ATTATATCAG TACTGAAACC
  AGAGTTTAGG AATGAGTGTA GCATGCCATG AGAGCACAAT GAAGGCACAA AGCAACGGAA
  TAGTGATTGG GGATACCAAG GCAGAGCTAA TGGAGTTGGA AGGGTAGGTG GGAAATGGCA
  Y
  TTTGAGAAAT GTTCAGGAGT GTGCATCAGA GTTGCAGTTA CAGAAAGCCC TTGGCTTTGC
  TTGTGGGTGA ACAGGGAGTT GTTAAGGGCA TGAGTCAGTT CACTTGTGCC AGTATTGTTC
  TTCAAAAACA ATTATATTTA ATAAACCTGC AATAGTCTGG AGCCTTGAGG GAGCATATAA
  CTTTTTGTGT TTGAGCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37664935	NES09035289	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27480997					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664935	NES09035289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114567120 () rs orientation: forward

Symbol	Name	Function Class
Rr562865	regulatory region 562865	833 bp distal