rs27480994 SNP Detail

Summary

• ID
  rs27480994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114567259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGATTG GGGATACCAA
  GGCAGAGCTA ATGGAGTTGG AAGGGTAGGT GGGAAATGGC ATTTTGAGAA ATGTTCAGGA
  GTGTGCATCA GAGTTGCAGT TACAGAAAGC CCTTGGCTTT GCTTGTGGGT GAACAGGGAG
  TTGTTAAGGG CATGAGTCAG TTCACTTGTG CCAGTATTGT TCTTCAAAAA CAATTATATT
  Y
  AATAAACCTG CAATAGTCTG GAGCCTTGAG GGAGCATATA ACTTTTTGTG TTTGAGCTTA
  CTGGTGATTT TGTTATGTAT TCCTTAAATA TCAAAACTAA AACAAAATTC GAAGTATTTC
  ATGCATAGAC AGTTCTTTAA ATTAAAAATA AAGTTTCATT TTCATTCAGA GCACATTCAA
  CATATTTTGG GACATTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37664932	NES09035295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27480994					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664932	NES09035295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114567259 () rs orientation: forward

Symbol	Name	Function Class
Rr562865	regulatory region 562865	972 bp distal