rs27480992 SNP Detail

Summary

• ID
  rs27480992
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114567671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATCATA GGTGTAGACT
  ATAGTTCATC AGTGATGACC ACATGATCCA TGTGCTACTG TGAAGATTAA CTCATGAGTG
  ATTTGTTTGG TCCAACAGTG AAGAGTCCCA TGTGGGACTG TGGATCAGGC TTTGTGTGCA
  TCCCTATTTA TCTACATTTT CATTTCCTTC AATGCTTATG TTAATACCAG TCATCAACTA
  M
  TACCTTACTG AATCTAATCT ACTACAAAAT TAGAAAAAAC AAACCATGAT CTTTAGAGAA
  GAAGCAAGTA TAAATATATT CTGATTTCCT TCCTATGTGT AAGTTACAAT GGCAGATTTG
  GTTCTCGGTG CAGGGGATGC CTAAGTAAGC CTTGTACCAC TAAGTTATAT CCCCAACCTG
  TAGGGTTTTG TTTGTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37664930	NES09035299	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27480992					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664930	NES09035299	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114567671 () rs orientation: forward

Symbol	Name	Function Class
Rr562865	regulatory region 562865	1384 bp distal