rs27480988 SNP Detail

Summary

• ID
  rs27480988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114568218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAACTA AATTTCTAAA
  GATTTGAATG AAGCTTATTT CAGTTGCCTA TTTGCTTACT CAGAAGGGAT GGGCCTCCTT
  GGGCTTGCTA AAGAGGAATG ATGCATCTGG GAGGTCTATA AGCCTCTCTG CTGACTCAAT
  TCAACTTTCT CTTCTACCTC TTTCTGCAAT GTTGCTCCAT GCATTGTATG AACAGTACTA
  R
  GGACAAAGTT AAGGGTATAA ATGATGAAAA AAGAACTTTT CCAAATGCTT TGCTGTATTA
  GTTTATCATC TTGTTTAGAA GGGTCGGGGA TTCAGCTCCC TTGTAGAAGC TTTGTATTCC
  ATCTTCAGAC TGAAAAGTTC CAGCAAATGA CCAAATTCAT TGACATTGTC AAAGAAAGCC
  ACATATGTGA CAGTATTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37664926	NES09035189	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27480988					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664926	NES09035189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114568218 () rs orientation: forward

Symbol	Name	Function Class
Rr562865	regulatory region 562865	1931 bp distal
Rr562866	regulatory region 562866	1685 bp proximal