rs27480697 SNP Detail

Summary

• ID
  rs27480697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114379436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGGATA AAGCCTTTTC
  AGATGCATCT CATCTGGACA GGTGGAAACC AAGGAGTAGA ATCGCTCGGC GAGAAGGATG
  TGACCCCCAG TGATTTCTGC CAAGCTCTGC CCTATGTCTG CTGGAGCATG CAAAGCCTCC
  CAAACCATAG TCAGGCCAGA ATGGGACCAT CTCAGGAAGA CTTATAAATT CTATAATCAG
  Y
  GCTTTTAAAG TCAGAATGAA AGCAACACCG TACCAGGCAG AACCTGACCC TGGTCTTAGA
  TCTGGTGTTA AAGAGGTGCC AGTGGAAGCA GGCAGGGAGG GGTCTTCGAA CATGAAAGTT
  AACTGGCCTT AAAGTTCATT CCCTTCACTT AGCAGCCAGA CTATGACTGG CTCTGAGTAC
  CCACCAGGCC CATAGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37699621	NES09230097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T		C	T	C	C		C
ss321274364	CHEV_4_114194844	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27480697					SNP	C	C	C	C	T	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699621	NES09230097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114379436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597591	regulatory region 597591			1465 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant