rs27480690 SNP Detail

Summary

• ID
  rs27480690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114380537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGCCTA GGGTACAGGA
  AATCATTGCA GAGTCCTGTT CATTAAGCAC TCACTGTCAC AGTGGTGTTC AAAGAATGAG
  ACTGTCGTAG GGAGCAGGGC TGCTCAGATC CTCAGAGATC TCCATGTCTC ATCATTCCAT
  GTCTGTATCG TCCTTGATTC AAGGAAGGCT TCTCCCAGTT GGCTTCAGTG GTCTTGCACG
  Y
  AAATGACTAA GAGGCTACCA GCAGGTCACA CCTTTAGGCA AGACCAGAGC AGTAATGTGG
  CATCTGATCA GGCTAGGGTG ATGAATGCCC AGACTACATG CTGTGGGATT GGCTTCCTGG
  AGGAGGAAGG CTCTAGACTC TAAGAGATGC TAATTAGGAG CTCTTCCTAA GGCTGCCAGG
  GCTGAGAGAA AGGAGGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699614	NES09230105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480690					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699614	NES09230105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114380537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597591	regulatory region 597591			364 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant