rs27480453 SNP Detail

Summary

• ID
  rs27480453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116259483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGGC AGGTAAGTCT
  TTGTGAGTTT GAGGTCAGCT TAAGCTACAG AGTGAGTTCC CAGGACAGCC AGAGCTATAC
  AGTGAAAATA AAAACAGCCC CTAAAGTCAA GTTTTACCAT AAGACCTAAA TCTGAATTTC
  TTTTCATGTA AAAACAGTCA CTTCCTATAA TGGATGGGGC TCCTCCAGAA AAGATGCTCA
  R
  CACAGTCGTC TCCAGGCATA TTTTTACCAG TAAGAAAGTG AATGTACAGT GTATGACTGT
  TTCATCCCCT TCTTTTCCCA GGAACAAATT CCAGCCGGAG AATGAGCCCA ACACACAATA
  ATAAGTCAAG CTATTATTTT TCCAGCTTGT GTCTTCTTTC ACATAAATCA TTAAATAAGC
  CAGTGTACTT CTATTTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694677	NES09227274	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480453					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694677	NES09227274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116259483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597905	regulatory region 597905			502 bp proximal
Rr597906	regulatory region 597906			1535 bp proximal
Rr597907	regulatory region 597907			1752 bp proximal