rs27480450 SNP Detail

Summary

• ID
  rs27480450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116262051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACAGAAAT ACACAGAAAT AGACAGGCTA ACATAAATGG
  ATAGCATATA TGCAAAGCAA AGGTTTAGAA AAATGTCCTA ATAGTTTACA CAGAATCAAA
  Y
  GTTACACACA CACACACATG AGCATGACTT TATTATGAAA TAGAGACAAG CATAATGGTC
  AGAAACAGAA TGTTTGCATA GCTAATGTTC AAATTAGGTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694673	NES09227240	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480450					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694673	NES09227240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116262051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597905	regulatory region 597905			1865 bp distal
Rr597906	regulatory region 597906			671 bp distal
Rr597907	regulatory region 597907			795 bp distal
Rr597908	regulatory region 597908			566 bp proximal
Tssr42878	transcription start site region 42878			330 bp upstream
Tssr42879	transcription start site region 42879			1254 bp downstream
Tssr42880	transcription start site region 42880			1280 bp downstream
Tssr42881	transcription start site region 42881			1991 bp downstream