rs27480201 SNP Detail

Summary

• ID
  rs27480201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116459301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTGACC AGGTACTCTT
  CCATATATTC ATTATTAAAG AAGCCATAAA TCAAATCCAT CTCCCAGATA CCCAATAACT
  TCATATGCAA AATATTTTCA GTACATTCAT TTTTCACATA GACACTTGAG AGGCCTGGCT
  TCCCAGTCCT AAGACCAGTG TGAGAAGCAA GTGGCCATGT CTACCCACCT CGGCCTCCAT
  R
  TTTTCTGAAA CTTCCTTTCC ACTGGAGACA GCATCCCCAC TGCCTCCATT CACCTCTGGC
  TCTTGTTTAG CTTTCTTTGC ATCATCCTTC CGGGGACTCT CTTCCTCTGG TTTCCTCTAA
  AGGTAGAATT GTAAAGTGTT CATATTTATC TTAAGAAAAC AATTGCAGAA AAATCCTGTT
  GCCCCTCTGG TGGCAACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694422	NES09222073	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480201					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694422	NES09222073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116459301 () rs orientation: forward

Symbol	Name	Function Class
Ccdc17	coiled-coil domain containing 17	1838 bp downstream
Nasp	nuclear autoantigenic sperm protein (histone-binding)	Coding-Synonymous
Rr597935	regulatory region 597935	668 bp proximal