rs27480194 SNP Detail

Summary

• ID
  rs27480194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116461948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTCAGA CCTCCTATTC
  TATGGGATTT TGTTATATAC AGATAGCTCG TGGCTAACAC ATTTCTCCTT TAGTCAGCAG
  AGGGCAGAAA AACCTGCCTT TGTAATTTTG GATGTTCAAG GTCAATCCTA AGGAAAACAG
  GAAGGGAGAA TGGAGAAAGG TAGGAGACGG CATAAAAGAA ATTGCATTAC CAGATTCAAC
  R
  CTAACTTCTC CAAGTTTAAG ATGGGCTTGT GCAGCATAAA GCTGGGCTTC TTTTGTTTCT
  TGCCTAAAAG AAAGATTAGT AAAGCCTTAA AAATAATCTT AAACTGCTTT CTATTTTCAA
  CCACAACATG AGCCCAAAAA CACCCAGAGT TTTTTACCTC TTAAAAATGA TCTTGGCTAA
  ATCCAGCATA TCCCAGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694414	NES09222012	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27480194					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694414	NES09222012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116461948 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nasp	nuclear autoantigenic sperm protein (histone-binding)			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr597935	regulatory region 597935			1958 bp distal