rs27479574 SNP Detail

Summary

• ID
  rs27479574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119822305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACG CTCATTGAAC ACACCTGCAC
  R
  TGGATTTTTT TAAAATTAGA ATTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649347	NES09022126	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A		G	G	G	G	A
ss45310141	mCV22569987	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27479574					SNP	A	A	G	A	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649347	NES09022126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119822305 () rs orientation: forward

Symbol	Name	Function Class
Mapkbp1	mitogen-activated protein kinase binding protein 1	Intron
Rr563617	regulatory region 563617	570 bp proximal