rs27479098 SNP Detail

Summary

• ID
  rs27479098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118976615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCTCACA CAAGGCTGAA
  ACCCAGCTAA AACTATCACA CACTATCCTA GACAGAGTCT CGCACGGCTC CTGATCTTAG
  GCTTCCCTCT TGGACCCGAA TCGCCCAGCC CAGCGCCATG CGGGTGTTCT GCATCCGTAG
  ATGCTGGTCT ATTTCTTTGG TTTTGGCATG AGTCCCCAGC TCTCTTTTCC CACAGCCAGT
  Y
  AAGGGCCTGC CTCAAGTTAT ATTTCTTGGC TTCTTCGTTT GAAGAGCTGG AGAGTCCCTA
  ACTTTGTCTA TTCAGGTGGA CACCTCACTG GCCTTCCACC TCTGTGTAAA CAGGCCCTTT
  CACCTGCTGG CCTTATCCCT TCCTGCTGCC TTCAACCCTT TGTCCCTTAG TCACTTCGGG
  TCATGTACTT TTTGAATCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37685520	NES09197644	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27479098					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37685520	NES09197644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118976615 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	865 bp upstream
Rr598496	regulatory region 598496	within coordinates
Rr598497	regulatory region 598497	1393 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	996 bp upstream