rs27479089 SNP Detail

Summary

• ID
  rs27479089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118978775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAGAGT GCCTCTCTCG
  GGACCAGGGC ACCAGACTAG AATCAGAGCT GGGCTTCTTC CAAGTAGGCG GAGCTTGGCT
  GTAGGGGCCA CGCCCGATGC TGGGGAGCAA GTCCCTAGGA AGGCTTGGCT GCTGAGTCAT
  GCTGAGCTGC AGCAGCCCTG ATGGGATTTT TCCAGGATCT AACATGGCAA CTGTGAGCCC
  W
  TGCTTGGAAC AAATCCCAAA CCTTGTTTTT ACTAAGTGCT TAGACAGCTC CCACCTAAGT
  GTGTCCTTTG CAGCCAGCTG TTTTGGGGGA ATCTGCAGAT GTAAAGTCTA TACAACAAGA
  TGGGAAAAAG TAGGGAGATG GGCTTGCTGC ACATTGAGGG TCCCTGGACC ACCCAGGTTC
  TGGTTTGGGA TGCCAAGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37685511	NES09197592	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27479089					SNP	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37685511	NES09197592	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118978775 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	within coordinates
Rr598496	regulatory region 598496	1670 bp distal
Rr598497	regulatory region 598497	within coordinates
Rr598498	regulatory region 598498	1811 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	1119 bp downstream