rs27474296 SNP Detail

Summary

• ID
  rs27474296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109503490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA ATAATCTAGT ACCAATGGAG
  R
  GTCCAAGAAC AGAACTTCAC AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677518	NES09052325	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		A	G	A
ss147203211	ENSMUSSNP903163	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474296					SNP	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677518	NES09052325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109503490 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	1555 bp upstream
Cpgi12032	CpG island 12032	865 bp proximal
Gm20638	predicted gene 20638	21 bp upstream
Gm45346	predicted gene 45346	within coordinates
Rr562477	regulatory region 562477	1065 bp proximal
Rr562478	regulatory region 562478	1566 bp proximal
Rr562479	regulatory region 562479	1859 bp proximal