rs27474295 SNP Detail

Summary

• ID
  rs27474295
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109506557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGCTGTCA AGCCAACCCG GTGTCGCCCT TAAAAAGCGT
  CTTTTCCGAG GTTCGGCTCA CACCGAGATC GGGGCTGGAG AGAGAGTCAG ATTTTGGAGC
  K
  GAGCGTTTGG AGAGCGAGCC CCAGTTTGGT CCCCTCATTG AGCTCGCTGA AGTTGGCTTC
  CTAGCGGTGT AGGCTGGAAT AGACTCTTGG CAAGCTCCGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677517	NES09052326	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474295					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677517	NES09052326	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109506557 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bdnf	brain derived neurotrophic factor			Intron
				mRNA-UTR
Cpgi12032	CpG island 12032			1744 bp distal
Cpgi12033	CpG island 12033			within coordinates
Cpgi12034	CpG island 12034			930 bp proximal
Gm45346	predicted gene 45346			within coordinates
Rr373669	regulatory region 373669			851 bp upstream
Rr562477	regulatory region 562477			1502 bp distal
Rr562478	regulatory region 562478			1209 bp distal
Rr562479	regulatory region 562479			1108 bp distal
Rr562480	regulatory region 562480			305 bp distal
Rr562481	regulatory region 562481			330 bp proximal
Rr562482	regulatory region 562482			831 bp proximal