rs27474293 SNP Detail

Summary

• ID
  rs27474293
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109507215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCTT TTCCGTTCTT
  TTTGCTTGTG TGTGGTGTGT GTGCGTGTAC AGTAGATTCA TTACTAATTA TGAAGCTTTT
  TACACAACAT TCGATTTCCT AAGATTTGAC TTTGTACCAT TTAGAACAAG AGGATGGAGG
  GAATGTGCAG TGGGGAAAGA GGAGGTGGAA GCTGGGAGAG GGACGGAGGT TAGCTAAATA
  M
  CCACAAAAAT GAATCAAGGT AATTTCAGCT CCTCTAGTGA GGAGGATTCA TTCTCTCGGT
  ATCCCTGCCT CCCTCTCTTT CCCCCCTCCC TACCTCCTTC CCGCCCCCCT TTTCCACCCC
  GCCCCCTCCT CCTGCTTCCA TCCCTCCCTC ATTTTCTCTC TACCTCTCCA TCGCCCTCAC
  GATCCTCGAT GGATAGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677515	NES09052328	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474293					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677515	NES09052328	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109507215 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12033	CpG island 12033	577 bp distal
Cpgi12034	CpG island 12034	272 bp proximal
Gm45346	predicted gene 45346	279 bp upstream
Rr373669	regulatory region 373669	193 bp upstream
Rr562478	regulatory region 562478	1867 bp distal
Rr562479	regulatory region 562479	1766 bp distal
Rr562480	regulatory region 562480	963 bp distal
Rr562481	regulatory region 562481	within coordinates
Rr562482	regulatory region 562482	173 bp proximal