CTCCCTCATT TTCTCTCTAC CTCTCCATCG CCCTCACGAT CCTCGATGGA TAGTTCTTTA TGTTTGGGTG ATTTTTTTTT TTTACCCCTT TCTATCATCC CTCCCCGAGA GTTCCGGGTG CTGGCTTGGA GGGCTCCTGC TTCTCAAGGG AAGGGGGGCC GCTGAGACTG CGCTCCACTC CCTGCCGGGC CGGATGCTTC M TTGAGCCCAG GTCCGAGTCA GGCGGGGTAA CTCAGGGAGG AGGGGGGTGC TCCGCTCCGG AGTGGAAGGT CCTTTCTAGA TCGAAGAGCC CGGGAACGGC CCGGGGAGGG GGCCTGGGTG GTTTGTGGAG GTGGAGAAGA ACACTCCTAG CTCCGTGCGG CGGCAGGACC GAGCCACCAA TCAGCGGGGC GCGCAGACCG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37677513 | NES09052264 | PERLEGEN | MM_PANEL2 | f | SNP | C | A | A | A | A | A | A | A | A | C | A | C | C | A | A | ||
ss45210050 | mCV23782097 | ABI | CRAMUS_MOUSE | f | SNP | C | A | A | A | |||||||||||||
ss147203247 | ENSMUSSNP1623556 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | A | A | ||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27474291 | SNP | C | C | A | A | A | A | A | A | A | A | A | C | A | C | C | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37677513 | NES09052264 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr2:109507559 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bdnf | brain derived neurotrophic factor | Intron | ||||||
mRNA-UTR | ||||||||
Cpgi12033 | CpG island 12033 | 921 bp distal | ||||||
Cpgi12034 | CpG island 12034 | within coordinates | ||||||
Gm45346 | predicted gene 45346 | 623 bp upstream | ||||||
Rr373669 | regulatory region 373669 | within coordinates | ||||||
Rr562480 | regulatory region 562480 | 1307 bp distal | ||||||
Rr562481 | regulatory region 562481 | 172 bp distal | ||||||
Rr562482 | regulatory region 562482 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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