rs27474290 SNP Detail

Summary

• ID
  rs27474290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109508082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAGACT CCGGCTGGGA
  GCCGCCCAGT CTTTTCCTCC AACTCCCCTG CCCCCGCCTG CGCCCCCAGG GGACTCGGTG
  CGCCCGGAGC GTGCCACTGC GCTGTCCTCC AGCCTCTCTT CCGGGAGTTC AGGGACTTGC
  GTGCCCCCGG GCGGGGGGCG GGGAAGACCT CTCCACACTC TTACAACCCC CCATTCCCAC
  Y
  GCTTCCACCG CCCTTTGTTC AGGCCAGGAG CTTTGCCCTG CCGCAGCTTT CGGAGTAAGG
  CTTGGTGCCT TGGGACCCCT CCCCGGATAA GGCTTGGGAT GCGGGTGAGG GGCGTTATTG
  GGGGGAAAAG GAAAGATTTC CAAAACTCAA GACTCAAGAT TATTTTAATG AACGAAAGCA
  TCCCAACTCT GCGCAGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ
ss37677512	NES09052265	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T		T
ss45261848	mCV23782107	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss147203251	ENSMUSSNP5755453	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ
rs27474290					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677512	NES09052265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109508082 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12033	CpG island 12033	1444 bp distal
Cpgi12034	CpG island 12034	within coordinates
Gm45346	predicted gene 45346	1146 bp upstream
Rr373669	regulatory region 373669	within coordinates
Rr562480	regulatory region 562480	1830 bp distal
Rr562481	regulatory region 562481	695 bp distal
Rr562482	regulatory region 562482	within coordinates