rs27474289 SNP Detail

Summary

• ID
  rs27474289
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109508488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATTCAT AGACGATGCT
  AGGATATTGT GGAAATTTGG GGGGGTGAGG GGGGTGGAGA AAGAATGAAA AACAGGCAGT
  TGGATCAGAT GACTGCCCAT AGGCTGTTCG CCACACAAAG GGAGCGTAGG GCAGGGTTTA
  CGGATCAAGC CTGCAGCGAA TGGGGCACAG ACAGTTCCGG GATCCAGGCG TTTTCTCAGT
  S
  AGATCTACGC GAAAGGAGCG GAGGGGAGGG GCCGGGAGGG AAGCGTGGCG GGAGGGGCAG
  GGCTTGGGGG CGGGGGGATT TCGGATCAGT CTGATGCAAT TCCAAGCGTG CTGCAAAGGA
  ACTCCAAGGC GCCCGCATCA CCATCGCCAC CCACCCTTCC CAGATGGTGC TGTTTTAAAT
  ACGGATCTGC AGGGCTGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677511	NES09052266	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	C	C	C	G	G	C	C
ss147203255	ENSMUSSNP2650314	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474289					SNP	G	G	C	C	C	C	C	C	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677511	NES09052266	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109508488 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12033	CpG island 12033	1850 bp distal
Cpgi12034	CpG island 12034	79 bp distal
Gm45346	predicted gene 45346	1552 bp upstream
Rr373669	regulatory region 373669	within coordinates
Rr562481	regulatory region 562481	1101 bp distal
Rr562482	regulatory region 562482	within coordinates