rs27474286 SNP Detail

Summary

• ID
  rs27474286
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109509716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAGTTC TGAATTAGAT
  GAAAATATGA TGTGCATCTT GCCAGAATCT TTCCCAGTAT CCTTGACATT AAGACCCACA
  ACACAGCAAT TTTTGGAGGA CAGAGAAGAA CATCTGAATA GGCTCTGCAA ACTGCCACTC
  CAGAAATGGG CCTCATCAGT ATACCATCCT TTTTACATGC AGCATTTGTA CTTGATTGAA
  M
  CAGAGTCCTT GCTAATTAAA AAGATCATCT CATCTGTACA GTCAAGGCAG GAAATGAAGG
  TTGTTGTGTT TTTTTTTAAG CAAGCGATTA ATTGGCTTGC TAAATATTGT CAGTTATCTA
  TCAGTGTAAA TTGGAGAGAA GCTTTGAAAA GAAGTGGGAT CAACCTGTGT AAGCCGCTGC
  TTTCATTTGC ACTTCCCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677508	NES09052241	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474286					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677508	NES09052241	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109509716 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12034	CpG island 12034	1307 bp distal
Rr373669	regulatory region 373669	434 bp downstream
Rr562482	regulatory region 562482	282 bp distal