rs27474285 SNP Detail

Summary

• ID
  rs27474285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109511844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAGAAG TACATTACTT
  TTACTCATGA GTCAGAGAAT CTAATGGCCA GACATTTGTC AGAGGTCACT TAGTCCAGCC
  CATATCCGAT GCATGAGTTC ATGCTGGCTT GCTCTCTTTC AACCCTCTGG AATTTCATCC
  TGGTTTTGGA TTCCTGGATA CTTGTTTACC TTGGTAGATA GTGTTTGCCT ATCTTAAGTG
  R
  GCTATGATGG CATTTGCTCC CAGCATATTT CTGCAGAAAA TTAACAGTCA TAATTTTATT
  CCATATGTAT TAAATATTAA TCAATTATGA GTCCCAAACT ATGTCAGAAT TTGAAGATTC
  AGCCATGAGC AAGACTGAAT GATCCTTATC TTGCCAGAAC CTATAGGCTG GTGACAAAAT
  CTGACCCCTT AAAGACATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677507	NES09052209	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	G		G	A	A	G	G	G	G	A
ss45336203	mCV23782108	ABI	CRAMUS_MOUSE	f	SNP		G						A
ss147203260	ENSMUSSNP7182830	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474285					SNP	G	G	A	A	A	A	G	A	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677507	NES09052209	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109511844 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron