rs27464572 SNP Detail

Summary

• ID
  rs27464572
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128876788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA TACAAACCCC AACTAATATG
  K
  TGAGGAAACT AGGAAATGGC CTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37623300	NES09003525	PERLEGEN	MM_PANEL2	f	SNP		G	T	T		T	G	T		G	G		T
ss45379209	mCV24472936	ABI	CRAMUS_MOUSE	f	SNP	T	G			G		G
ss147577514	ENSMUSSNP2272202	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss320503971	CHEV_2_128860604	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27464572					SNP	T	G	T	T	G	T	G	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37623300	NES09003525	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128876788 () rs orientation: forward

Symbol	Name	Function Class
Gm54152	predicted gene, 54152	within coordinates
Rr564832	regulatory region 564832	792 bp proximal
Vinac1	vinculin/alpha-catenin family member 1	Intron