rs27464571 SNP Detail

Summary

• ID
  rs27464571
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128877694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTTGTCCT TGTACTTGTA TAGAGCTAGA GCACATGAGG
  ACTTACTCAT GCGACCTTCT TAGCCCTCAG AGTATAAACT GTCTGATGCT CTAAATAAAG
  K
  TAGCTAGTGC CTGAGACTTT ATGACTTTGG TTATGGTCAG AAGAAATACA CAAAATATTT
  CAAATCCTTA ATGGCTAAGT GTCCCTGTGT TGCCCTAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37623299	NES09003526	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		T	G	T	G	T
ss45351321	mCV24472937	ABI	CRAMUS_MOUSE	f	SNP	T	T				T		G
ss147577520	ENSMUSSNP2525850	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27464571					SNP	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37623299	NES09003526	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128877694 () rs orientation: forward

Symbol	Name	Function Class
Gm54152	predicted gene, 54152	within coordinates
Rr564832	regulatory region 564832	93 bp distal
Vinac1	vinculin/alpha-catenin family member 1	Intron