rs27464569 SNP Detail

Summary

• ID
  rs27464569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128878100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACATCTG CAGAGGTCAA
  AGTGGATAAG CAACCTGGGT ACTGCCATTC AGAGCAAAGT TCGGCCAAAG TGATAAGGAA
  AAATTCCACT AAAGTGCACG GGAAGCTTAG GCTTGAGTTT TAGGACACAG AGTAGATACT
  AAAGGAAGGA AAATATGTTT TCATGGATGC ATTCATTAGC CCTCTGTAGG ACTAGAATGC
  Y
  GGAATCTAAA TGACACTGAG ACTTCTCTGA TTTTGTTAAG GGCATGCAGA GGGAGCTGTG
  AGCCGGAGTT TCAGATCCCC ATGTTTCAGC TTGTATAGGC TGCTTGCCCT GCCTGCCTTG
  TGTGAATTAT ACATGTGGGC ATCAAGTCCC TGGAATGTGC TAGGATCTGT AGTTACTACA
  AGCAGGTCCA GGAGGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37623297	NES09003528	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27464569					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37623297	NES09003528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128878100 () rs orientation: forward

Symbol	Name	Function Class
Gm54152	predicted gene, 54152	338 bp downstream
Rr1350	regulatory region 1350	1954 bp proximal
Rr564832	regulatory region 564832	499 bp distal
Vinac1	vinculin/alpha-catenin family member 1	Intron