rs27464568 SNP Detail

Summary

• ID
  rs27464568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128879203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA CAGGCCCTGT CTCCTGCTGA
  R
  TCTCTCCATG CACTGCATCA GGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37623296	NES09003529	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		G	A	G	G		A	A		G
ss45273544	mCV24472948	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				A		A
ss147577541	ENSMUSSNP5451225	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320503974	CHEV_2_128863019	CHEVERUD	SCREENING_POP	f	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27464568					SNP	G	G	A	G	G	G	A	G	A	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37623296	NES09003529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128879203 () rs orientation: forward

Symbol	Name	Function Class
4930402C16Rik	RIKEN cDNA 4930402C16 gene	1263 bp upstream
Cpgi12243	CpG island 12243	1425 bp proximal
Gm54152	predicted gene, 54152	1441 bp downstream
Rr1350	regulatory region 1350	851 bp proximal
Rr564832	regulatory region 564832	1602 bp distal
Vinac1	vinculin/alpha-catenin family member 1	Coding-NonSynonymous